PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g026570.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 142aa    MW: 16817.9 Da    PI: 7.8448
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g026570.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox482.1e-152474656
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++  e +++Lee+Fe+++ ps+++  +L +k+gL+ +q+  WFqN+R + k
  Solyc07g026570.1.1 24 KYDVEKTQQLEEFFEECQRPSEDQQNQLGRKVGLDSKQIMAWFQNKRSQTK 74
                        577899*****************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-15870IPR009057Homeodomain-like
SuperFamilySSF466896.27E-141275IPR009057Homeodomain-like
PROSITE profilePS5007114.5281676IPR001356Homeobox domain
SMARTSM003891.1E-81680IPR001356Homeobox domain
CDDcd000863.20E-82374No hitNo description
PfamPF000468.2E-132474IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MIDSGKKQVG ESSTTPKRQR HCHKYDVEKT QQLEEFFEEC QRPSEDQQNQ LGRKVGLDSK  60
QIMAWFQNKR SQTKAKDDKL DNYTLRKENE FFRYEIMAMK EKKKNNMCPQ CDGPSIGEEE  120
RMCNLENLKT ESQRMREEVN L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536681e-112Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48p11 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243130.22e-93PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBLK4CDA31e-102K4CDA3_SOLLC; Uncharacterized protein
STRINGSolyc07g026570.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1859434
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-29homeodomain GLABROUS 8
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]